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flexVDI Manager trusts the default CA certificates trusted by JVM programs, stored in /etc/pki/java/cacerts. If you have bought a certificate for your ldap server, and it is signed by one of the CAs in that file, it will be automatically trusted by flexVDI Manager. Otherwise you will get an error message like this when testing from flexVDI Dashboard:

Authentication test failed: Failed to communicate with the LDAP server at